Scaffold Ga0098048_1002394

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1002394
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7895
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016663	Metagenome / Metatranscriptome	245	N
F018905	Metagenome / Metatranscriptome	232	Y
F043391	Metagenome	156	N
F062669	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100239410	F043391	N/A	MNINILKAVQIYTTKKEFIVYTIVDNKIDKMILTNDLTRHRRKFGLDSRFLLTDTLKKQLRIINITL*
Ga0098048_100239418	F016663	GAG	MAKLRTYNVEAAKQLADKFVQITGLDLTSTSRYQEQAYFRALFYKIMCDINGMNDRMISEWFGDIGVERNRSSIFHALRKIDIYYESFVKFRNVYDLFFDDKKRERERIENKNSERVRRINERIDRKLDASDRNKIHELADVIPDDRIDEMHEMMTLRMKSWAWKSKDRCEVIQSSTSMDGMCW*
Ga0098048_100239419	F062669	N/A	YKTNNEAQSHCFKKGYVIYPEAFEGSWRVSIELGHRKHTYPEVLSLTEAYIKIWKEYEKIQNRDNNGKT*
Ga0098048_10023942	F018905	N/A	MTNNYKISLTLLIKLSKTKKTFICFNVENQKIKEFVLTNDLIRFRNSYNTFKLVEIIKPKLSKLTIEI*