Scaffold Ga0098048_1002350

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1002350
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7964
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023086	Metagenome / Metatranscriptome	211	Y
F026849	Metagenome / Metatranscriptome	196	Y
F039087	Metagenome / Metatranscriptome	164	N
F061769	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100235016	F061769	GAGG	MFKLAYCDKIADTIKKALRQTDPDGIIADAGPITSDLDPVGGWFVSPKKTLTVHDRNGKAYVVTIEEAPFLDKDQ*
Ga0098048_100235018	F039087	GAGG	MQNTNTKTARSIVRNILKQNNVMYSPHSYTNKCADSNLRNLCFLTKNLSDEVLEHIALNLNVAKVHATKPKFYNVHPDARYLRIVHCAK*
Ga0098048_100235019	F023086	GAGG	MQTTNTQYNAAVVAAITSFAKCIVNVAHDSVAENNDYAIHDSIDSIQFLYDNYANYDNVNSLANAALSSTLDTVVRENIHAQLV*
Ga0098048_100235020	F026849	AGGAG	MQNTTLTQHSYFTNCAAVTCENFALLTKQQQTHFTQAEKAFVLQFVVDTLQSLTLINCESAAENEQYFVRLTDALEVLQNLEMLYDNLSDNAAVYNFTIAQAAQAICSYDTEYRECICEQFEDACNDAAEVANANFATLALRVMYNY*