Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1002122 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1002122 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8419
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (8.70%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8419

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (8.70%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007692	Metagenome / Metatranscriptome	346	Y
F035780	Metagenome / Metatranscriptome	171	Y
F046977	Metagenome / Metatranscriptome	150	Y
F054413	Metagenome / Metatranscriptome	140	N
F059863	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100212214	F054413	N/A	MTKLKKKYSRSKSDLLKSLKSINRPTVVLSIEVIETSKIKDYLIYECVYLDNNVEKRINIIANDITEAMQKLEPYVGSGIPDTTTNLILGSEKYADVPLDPPI*
Ga0098048_100212219	F059863	N/A	MTEPKFKVGDKVSWIKPMACVPHPEGKTDRNGVVLPVFRDKLEKGRVMSYNYHGYSIRPDWAEEYKNSLCGERYYDVTIYVNDKSLKLV*
Ga0098048_100212220	F035780	N/A	MENTIDVKSKDEVWWATTNEYDLEVNGENLSVRIAETPKSTEFFIWNESTGWEEADTETGIMEIVYEAWSNGEIE*
Ga0098048_10021224	F046977	N/A	MVKTLTKYKVELQGDLLMIKDLKGNLLRGMAVQGFNAVDKFNEMVEKVKNHESKTSK*
Ga0098048_10021226	F007692	N/A	MRSITTLSQSAFDVKKAEAINNQLMRKEITLSEFNVIDNNHIDVDGVKIEVTDKAFGKLLGRLRIPKAFATRFSEGFGNDGLRQLITMMKSMKSSKNDQTVTLLVDPSNRKITDILPAGYASISNESFIDFAERYINQYNLDVTHMGSSQYGGTQINCVSPQGMFNVPGMTNEVFNTGVTFRNTPTRGLEVSPYLERLICANGMTSTSFAENYGLHNLNDKNINEFNEHMIRMASTNFQPVGLAENITKANNTDASLAEMQRAASSILSLDKNIDYNYIQKYIPVDRAMKAYSDLGADPNTFTKAQMKNAKSGMSVWDLVNGMTNFASNDTKYDVNEGKMGNLMVTAGNILCKKQYDTEGYLDINPFANKNLLTTSEAAMVRGEA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1002122

Overview

Ecosystem & Geography

Associated Families

Sequences