Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1001822 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1001822 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9131
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9131

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (13.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F015210	Metagenome / Metatranscriptome	256	Y
F024797	Metagenome / Metatranscriptome	204	Y
F040126	Metagenome / Metatranscriptome	162	N
F041804	Metagenome / Metatranscriptome	159	Y
F049672	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100182212	F015210	GGA	MYPFHISPVVMQQKVTNIYCMELFEKYRKWGKDITVFDVDDTLIVTKSKIRVFNPKTGYEIDLTPQEFNTFKTKPHDKFDFNDFRDLEILKAGKIIDWVFNILKRTISKGTAVGIITARDDSKLIYDFLMHNGVDVNPDFIFAINDPSLGFTGSTAQKKKDAFMKFVQMGFRNFKFFDDDKENIKIANSLNKDLPEVKMKATLIKQKWIPNFSDFK*
Ga0098048_100182214	F041804	N/A	LVVEALTFKLSLDFFVYLKKYKIDVSKIRVGFYDQVNQKTEFTDFNSIEEMELFYQNNYVPFDPCFIGDIVSIQLFLGASELYEFTTEYRASDLTGNFTLTTGSSFDIQRNSQRSVLVDRQVSFINKAVKEYRKYWDEIYRIYTLGIYSPCYAVPGWSQGTWYLNQLREVFTSRKDTDEFPYDDATIINEPPE*
Ga0098048_10018224	F049672	N/A	MIPKFNNYLNEASDYEFKPNEAATRLKAREKENIQRYRAAQDRGDNYAIALYELKIKMDKIDLEGLKVQTEIHKLKTKFGK*
Ga0098048_10018225	F040126	N/A	MKKVPLFEDFIPVGFAPSDSASFSLGGTNRAETGYDMNAIVGPVQTLGNHVAEQANSYESNDNAEHTAEAYIKEAKEHINNKIDEACESYSAMSESTLNEGTDISSWNQAGIKGSDNAQITTFVGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV*
Ga0098048_10018226	F024797	N/A	MSEFLRTSTGRKLLEKDIPKLASVLERIADQMEIKNRLEEKKFRLDEKIKKLQIKDINEKG*
Ga0098048_10018227	F008425	N/A	MKKDKDITYKQFIAHMDKGNKVYMKKPRSWQKVWFWWESKKEKWFLNKAFDKREDGIVKPEPSVWITAKQMESHMDHMVRMGYKYYIDE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1001822

Overview

Ecosystem & Geography

Associated Families

Sequences