Scaffold Ga0098048_1001693

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1001693
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9530
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F016832	Metagenome / Metatranscriptome	244	Y
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F073424	Metagenome / Metatranscriptome	120	N
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10016931	F073424	AGTAG	MKLTPKEIKEQKALFGSKAVNYFVRFMEARRKWRRLPDSFIKQVIENSEKL*
Ga0098048_100169313	F038672	N/A	MDELDVMLRKNKLDIMIIKASADIEKNNNPAKKEGLEVLVDILSLIHDLQHEIRENYRSIAKLKYENAVAYKENAILKTDFSTYKHNLKQTELKSTENG*
Ga0098048_100169316	F005706	N/A	MKESKVLKALGLTSLDIQNMLMSGVSMPEIAKRYNISYLSLVQAYKIQKKDFKYIDFAQPKKEVEDIQKVSFTFDKLYTEESLNENEILAYYKYEQKHKAYYE*
Ga0098048_10016932	F043411	N/A	MILEKTKKEMLKRRLTYNDKRVYIKSLGSNIAIVSHTEEGNYKQFKVNIEDLVDFK*
Ga0098048_100169323	F081203	GGAGG	MDKYQFYYRQRQEWDYWQANERHNFLSDRLLGVLSQARWNRDILKTLKLNDNDLEIHQNRFSQMITQVVKISLELKDLSINYNPKRIKNIIIILTKIKNYNNE*
Ga0098048_100169324	F016832	N/A	MSDLKYTMRTFYVPADKLETLVKFQNKCKELGHKSYSKVLLKLMEEFNDG*
Ga0098048_10016936	F056150	AGGAG	MNRKLIKKIENFIFWIGREYNVVNLEDFKQDIFIILLNKGEDFILRLEAENSIKKYVYKLCLYQIISERGQYRTKYYIPSHFSSIEDIETYSNSCFKDHVLQDLIDSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS*
Ga0098048_10016937	F030436	N/A	MKSTLNRIAEIVKEYKQTDVLDGNNLNKQLKELTAYLYHIETKRTKAHQDYERIIHNRVKEGFSVARATNEANVEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNITKEY*