Basic Information | |
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Taxon OID | 3300006752 Open in IMG/M |
Scaffold ID | Ga0098048_1001693 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9530 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (19.23%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005706 | Metagenome / Metatranscriptome | 392 | N |
F016832 | Metagenome / Metatranscriptome | 244 | Y |
F030436 | Metagenome | 185 | N |
F038672 | Metagenome | 165 | N |
F043411 | Metagenome / Metatranscriptome | 156 | N |
F056150 | Metagenome | 138 | N |
F073424 | Metagenome / Metatranscriptome | 120 | N |
F081203 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0098048_10016931 | F073424 | AGTAG | MKLTPKEIKEQKALFGSKAVNYFVRFMEARRKWRRLPDSFIKQVIENSEKL* |
Ga0098048_100169313 | F038672 | N/A | MDELDVMLRKNKLDIMIIKASADIEKNNNPAKKEGLEVLVDILSLIHDLQHEIRENYRSIAKLKYENAVAYKENAILKTDFSTYKHNLKQTELKSTENG* |
Ga0098048_100169316 | F005706 | N/A | MKESKVLKALGLTSLDIQNMLMSGVSMPEIAKRYNISYLSLVQAYKIQKKDFKYIDFAQPKKEVEDIQKVSFTFDKLYTEESLNENEILAYYKYEQKHKAYYE* |
Ga0098048_10016932 | F043411 | N/A | MILEKTKKEMLKRRLTYNDKRVYIKSLGSNIAIVSHTEEGNYKQFKVNIEDLVDFK* |
Ga0098048_100169323 | F081203 | GGAGG | MDKYQFYYRQRQEWDYWQANERHNFLSDRLLGVLSQARWNRDILKTLKLNDNDLEIHQNRFSQMITQVVKISLELKDLSINYNPKRIKNIIIILTKIKNYNNE* |
Ga0098048_100169324 | F016832 | N/A | MSDLKYTMRTFYVPADKLETLVKFQNKCKELGHKSYSKVLLKLMEEFNDG* |
Ga0098048_10016936 | F056150 | AGGAG | MNRKLIKKIENFIFWIGREYNVVNLEDFKQDIFIILLNKGEDFILRLEAENSIKKYVYKLCLYQIISERGQYRTKYYIPSHFSSIEDIETYSNSCFKDHVLQDLIDSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS* |
Ga0098048_10016937 | F030436 | N/A | MKSTLNRIAEIVKEYKQTDVLDGNNLNKQLKELTAYLYHIETKRTKAHQDYERIIHNRVKEGFSVARATNEANVEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNITKEY* |
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