Scaffold Ga0098048_1001619

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1001619
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9771
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061838	Metagenome / Metatranscriptome	131	N
F066233	Metagenome / Metatranscriptome	127	N
F068848	Metagenome / Metatranscriptome	124	N
F080617	Metagenome / Metatranscriptome	115	N
F099229	Metagenome / Metatranscriptome	103	N
F103276	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100161910	F061838	GGA	MSDMFNKIMPKSYDDFAKYSNMVMDHDVLDGKIKSIELDFEPSKEPIKYGGYEMKQPGTLVVNIFLNTEDFYEISDSIPGIQKSYELMPELEADGFLEFNGYEFIKNIIFPYISQKFLRLMGLSLGDVPYIDFNLINHRGKVLVNYEEDLETFIGSENSIVWKKIS*
Ga0098048_100161916	F066233	N/A	MELENNLDGELKVEAQEKGKMAVKVLDALVFSKFGGIEYSMIIRKTRAINYSTVSASIPFYFEFDIDVDVDKTFQPSPTYDKKYEEYIYEIGDHIGRALRYVNLQDYMDEPMFTYVNDELVENEVDRLENKLILYLQSQYEGLSYDSIREADIGYYFYKGETDNPYMRVEYVGQPPLRDGDRKYSKDWNNIEEREYFSCEDLYDIMSDLFDRSPLSLSYDGENFTCQ*
Ga0098048_100161917	F099229	N/A	MDKDINKIVEIGKVLLNTPTLRSIYKDKFEISTIDFEFVEKTSNSQFTAKYEHYIFKVTLYTDIPLNFDEEIKSGEIEDYDEIDNELWEYGIDPFYLADVIIPEQILNIILPKGKNAPKVAIELSIIGNEGQVVWNDHMFGRPASSQFH*
Ga0098048_100161918	F080617	N/A	MVDNKLKWSLEKLLNTVGRNLAMNYYGFDSEYEVVSIIDEKTGEEVTDFNFGDTENYTATVKSKEPLPEIFDVKIEPLFRYGKFAQPMDLQFNLENLTKYISPNQIAIQLVGPEWKPGENTYRTLQSFEDKWGRSLERDVNDFNLNPDNWILLSNDVVVDKLTGDSFPLMRNGLIDKTQVWNIARVDDDEWWNSLTDEDKERLTDNFS*
Ga0098048_10016192	F103276	GAG	MEKFLDKTKSDNKIVDMYTDVRKWLQSEGHTTITSQSISKAPHDIWRLMENLRGEVSVLRDTLRRYGILESDDVYEEWLKSRLSKIDKQYPLIDERND*
Ga0098048_10016199	F068848	N/A	MNMSNNKDMETQYGMLFKFMNQSRSKYMGLDLTYDLELLPENRISVDIFAEGKFDLPIRTKQMFRNMFMEFFVKDSKYFNIPRSTVRLLDFNNISLNGERLGDRITMDDNFKKDLVEVESKLKKYYSIDIADNPQGSFKLESFNNDLKTYIELLDEDSLMYTVDIKDSQKITLNGNEFNKNTIFDFLDSVDLGEDNSFTSPTKSQPVRKMDPDSIFESISNAVWENSVEGDGTSLELFWNKLMSNGMNYQNHFMENIGMLSVVNFNSYDGMFNDNMHNYNTESQSEVLSIFVGWLESNKGKYKL*