Scaffold Ga0098048_1001505

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1001505
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10194
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F020003	Metagenome	226	Y
F040392	Metagenome	162	N
F100005	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100150512	F100005	N/A	VSGHLERAMPEVVTTVLEDGCVCISVGDFTGVVSSMHLIEPKVHQLQSAWLAREAELSDAR*
Ga0098048_100150516	F020003	AGGGGG	MSTKLNGTRYSPAGSRVPAELLPTAIRYERARAVVFEQLGQFSQANECVRLKRYYEQRAMKECSE*
Ga0098048_10015054	F006772	GAGG	MPRTGRQLVMERLNKAIRTATTGDLQRAAMFLEGAREVRAGCTNQRAQARRAQSNAWKKKVDSSITW*
Ga0098048_10015058	F040392	AGG	MCYFVHRVYRAVTEKQIHATIKTAHHYGGSFLSKVAEAALNADPRNRDRVLDAFPEIVAKYGPGSAFYNEYF*