Scaffold Ga0098048_1001095

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1001095
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12114
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024092	Metagenome / Metatranscriptome	207	Y
F058065	Metagenome / Metatranscriptome	135	Y
F062670	Metagenome / Metatranscriptome	130	N
F085649	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100109512	F024092	AGG	MGPFSELKQLERKASVLRILQQGDLSEWARNYWGRIYDTIAMNEDRYNARVVTTFKNAKRGDIEYE*
Ga0098048_10010952	F058065	GGA	MIDLYRIYDHTEKNMLANAIPTYEQAYTVLGHLKLEFPDNELEIEHYTRATVKGLGRDPDLH*
Ga0098048_100109521	F085649	GGAGG	MQTLSFTLKGDGYWGAEAGRKVTLKGFNVTYMNADTYEHCNEGDDNAVIGHVTVEHDSTWDVYSDTGFSEAAANYTNIMGLDFTEQGMQEDNLASMEV*
Ga0098048_100109522	F062670	GAGG	MYYIYNTDTSRIESNPTRGKHYLKAQYKTMGAAKAAMTRMHKKFEANRFELLASKYSFERDRDEAKAENSPLYTCGIAEAEHYHKNIEKTVTKTGICPGTGKQITHTASVNEPHYMNPLSETYWSM*