Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1001054 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1001054 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12370
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12370

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F020902	Metagenome / Metatranscriptome	221	Y
F037248	Metagenome / Metatranscriptome	168	Y
F098225	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100105415	F037248	AGGAG	MPEGMQAATPPEPYLNRKGKQPSLLTDDKVRILLSSPEQWFIISTKDKWISGVKANIESMTQRNIAHLSDKGKFEIQQRRNKTGQIDIYCRFVPNYKEEIL*
Ga0098048_100105417	F098225	N/A	VPNSKAYPYPEIVTGEKWEVVGTINNSPEGSTDNLNRQMTVPLDRECSECGINHSRMIRRHELGHAKWSPKTMGKLKPGVRAEAVHVLEEVRVNHLLYENKLALSEPSQCLGTLQQKTMKLVYESGIAEIILMGLASKWKVPDNDTNRRYASYKYNDEWVVMSSCFAMIRDDDTVTDYRKQQIIYAERTITRFFQSITNHGYGQTISYRKVQKYAEQLSLILDMFRDEPEHDEVYKPKPKHTAPGMDEGEGEAQESNELGGGSLQQRTRNDIAEMLYNSSQGTGQWGEMFTHKPPLSVNLQGRLKNGRAYRPSDFGYNPKYISRYCIDKKIFKQKMTALGGTILIDASGSMSFDGQDILEIMQLLPAVTIAMYNGTGDIGNLRIIAKNGKRVTEKYLDRHSGFGNVVDGPALEWLGTQPARRIWVSDMHVFGAHGDTSGFNLMADVNKLVKKYNIINLKDIEEVKEHGLKLNM*
Ga0098048_100105418	F010091	GAG	MNTMNDIDKLLQEAETGKVSKITNRITEEAMPFWEGCEQRVLAGRQLKPYVVHRLLREQYGIKISESAVRNHFTNLVENAE*
Ga0098048_10010543	F020902	GGA	MDEYLETEFWDMIYQEYGVEDELDILSENITEIIMPQKGIIILITKDFNNGKETF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1001054

Overview

Ecosystem & Geography

Associated Families

Sequences