NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0098048_1001050

Scaffold Ga0098048_1001050


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1001050 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12403
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031061Metagenome / Metatranscriptome183N
F071268Metagenome / Metatranscriptome122N
F080078Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100105013F071268AGGMEAHMTERNYHEDLLDEFGDDLERIFGPIESRTKGLTSLAGQPDGDLKTLLKNLKTKVIDCSGFMPKRQPFLSVVKEVLRVMRDSVDPATGKSIFYGYNLPFFIEEERVQGAEEFDWDMVYIDYNVQRNIDVAHIIKDILIEWDTKLCDPAHGRKQSDGTIDINDSQHATCSRALVGAGVCPATYIVSDAKSDNANQFGARNISNKVTEWFDDYKVRVYRGGEMIKDGFPAKAGDAPYLDMHNELAEFDAFAIATQGTAKSAGSCNRADKLFDYRGQYGQDIFKRAVRTVRTAWGNGELCHATVWGVCTLMWYYKQNHNFGASEMRKLETELVNSIQAYYPDKPNTPNRASGKDALWPQVRKLIGKTYPKELDDFRGRQESFPFMIASALRSMILNHDFYRTHPEGLSSKSLLKLDLPPVERVNGTTTEYTINHVLIQDNRIWDRLDADEYNQQDFDDADFAFEEEDEAVTV*
Ga0098048_100105014F031061N/AMMQTLRLRKKMKQSQYKELLQKLGEVLSVLPGTIPVADKDLMEQQIIDKKYQIEYDSASHGGSQKLYEHFLEHRDLKWIWCHSGNRYGVDPKELYEQAPDRCPVFGTLLDYGLGKNASTTHPAFRPSMDHIEQQSRGGIKREDITNFEVMSVQANTYRNNATKMHQLYLLKYELTKS*
Ga0098048_10010506F080078AGGAGMQHPIEEWIKRINAMKDLCIQAHRIRNEFAEISYKEYDYVTCKHLLEQVQSLAAGIAADKITDIKTEMDEWKNGNK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.