Scaffold Ga0098048_1001036

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1001036
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12523
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F013531	Metagenome / Metatranscriptome	270	Y
F019114	Metagenome	231	Y
F048285	Metagenome	148	N
F050758	Metagenome	145	Y
F097272	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100103610	F097272	GGAGG	MDLTEFGLDKIEAGESSGGGDRVKPGRYNFEYAGSEMIEGKNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLVKMLNAMGVASMKNSDELLGKKVEGELVVGEKGYLEVKDDFGNGWKPYGSTATEDNADPKDVLPKEDKEEMFPSDVEDEDDLPF*
Ga0098048_100103615	F019114	AGGAG	MKQLEARMVEARDEFYRNKRRKGFMAFWWLDPLHYLLVLEVAIADASSKSINFEAIVKLLPNSMGSRSTVATVLDDFVARGYMCKKVGKDKRERVYTICPDSMVLMNDWFTKRDFSLKAVS*
Ga0098048_100103619	F048285	N/A	MKIDPHQLEQATAFILETNKYIYEQARKLATQHLEAEDNKNFKSRIKRYEPESKETLLHFADEITAWAECEKNYPLMDFIDKFFKIKKGY*
Ga0098048_100103621	F004603	AGGA	MIFSININGLIIDWCYTINNQEKQYHQTWIPKIADIQILTKDLNGLTVSEVRKTILEDIQPDIQMVRDNTNKKAKARRQKNV*
Ga0098048_100103622	F002399	GAGG	MSIPKTKSSKSIIGQLRKKYGLKDNTPIHKVEIAMSPKDWKAFSTALTFPNGKPTQRGK*
Ga0098048_10010367	F013531	GGAGG	MVNEKKKEQPLLSFQDKDGNPREIYERDLTDATAPLVEEISRDLGAEKQLMQAYQLATKTVHHMEAVRKNVANTLEKLEAELPPYKKPVKIEGVTKEIN*
Ga0098048_10010369	F050758	N/A	MATQQEKLIFFMRKAKILVEDCMDKNGDDDLILPLGANRVLADIVDALEEEISRADDYEEYDPG*