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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006752 Open in IMG/M |
| Scaffold ID | Ga0098048_1001028 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12586 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (92.31%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014669 | Metagenome / Metatranscriptome | 261 | Y |
| F016595 | Metagenome | 246 | Y |
| F043908 | Metagenome / Metatranscriptome | 155 | N |
| F049098 | Metagenome | 147 | N |
| F056523 | Metagenome | 137 | N |
| F085897 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098048_10010281 | F043908 | GGA | MNLLPKKTSQREITPQQEEFLTNLFENGGNVTDAALQAGYAKGSITWLKNSLADEIIHRTKNILSMNAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNR |
| Ga0098048_100102816 | F085897 | GGAG | MTMIQPISLDKHLVDCVAEYKKLRQLQYDCEWNGQTEQASLYRNQSVRLKKLIKDGVLYQPKF* |
| Ga0098048_100102820 | F049098 | AGGAG | MSRPFKINEETKSYNLTVSKADYDELEKFATRETDRYASQISVADLIRNAIKLYLEDLRIADERTSED* |
| Ga0098048_100102821 | F014669 | GAGG | MNEQVKTDITVRTHDKQHVMWAKLSAVRVGIVDKEQVKLGNQRDYLTWIPICVAKSRNLLSHGYDLDRLGQVYTVNTKQYKQAMSK* |
| Ga0098048_10010286 | F016595 | GGA | MAYYFSCNECNYKEHFNDQFNIPSKALEGKLNDYESVICSSCVSQKVRLKGNYIIIEKGNK* |
| Ga0098048_10010287 | F056523 | AGGA | METKQYLIKSEYDFNNKKFNAVNNCELTVQFKVMDSCCLVEIVGRYNGRTNEEFKHQIFCHKDQMLKILPNVNDQVAKVDEPVSKDRVLIDQNIGVIFEEEETKKALYQLGLHGQLDLEDAIAEKKGN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |