Scaffold Ga0098048_1000773

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000773
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14746
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (37.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011846	Metagenome / Metatranscriptome	286	Y
F019754	Metagenome	228	Y
F020000	Metagenome / Metatranscriptome	226	Y
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F075429	Metagenome	119	N
F087900	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100077314	F019754	AGGA	MNNSDDFMLPSELEPSWPPSDDDIEAMELDAYDRQKLDDLIAEELWRESLPSVPTPAERNPNLK*
Ga0098048_100077316	F020110	N/A	MSTQLEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDIQAAQAEIELSDDGPSLEESSEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA*
Ga0098048_100077318	F023484	GAGG	MNINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNSIKEGDGLMLSNSCDPDQVLDADQVAKCKTFIRNHS*
Ga0098048_100077319	F022313	N/A	MTYHFLPREEYESAKLERILAELEAIIEREKKRHMMDEHLSHSMRDLLEDEIIPMLEAELNYDPTPDTAYDFFHQ*
Ga0098048_100077324	F075429	GAG	MPGTTELPETVTEFLEDGSVAVVVGHLRGWVSSAHLVEPKANQLMRQWLNEKSEALLNEDYDGAA*
Ga0098048_100077326	F011846	N/A	VKLSAGFIQSLEQENEGSSSKDNYLGYTKLEQGKPANFALLEQDPLEYWLVWAEAKASGSMKPFRFMGQPSSDEIDLELGSEYVQSMNYDKTAIRKPQQCLTWPVYNWDMDRVQVLEVSHISLARQFAKYGLNKKYSKNLLDWDFELSKIKADMVRYELLIVPRDEDEHNETQMEKAWLQVQKGGFDLNRMVTGDDPFTES*
Ga0098048_100077329	F087900	AGGAG	VQQKINLYYCQVDDDDDHFPLAIARFTAYDEDHKPLSVEQVTYESDPNYFQAQVSAALSCGVDVSVITASPMEDFAWINQLSQQA*
Ga0098048_10007733	F020000	AGG	MADVGTTQVDRFTNTVEFTGNAMSSVDDWIQVHAHSSEFSFAANVTSSANFTIALEANFNGNGDWFTIDTSKTINAAGQYVYFYTGKAATLIRMRIASISSGVVAMTPHVVVAYHG*