Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1000757 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1000757 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15046
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (90.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15046

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (90.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F020815	Metagenome	222	N
F032993	Metagenome / Metatranscriptome	178	Y
F044198	Metagenome	155	N
F067202	Metagenome	126	Y
F087896	Metagenome / Metatranscriptome	110	N
F090997	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100075714	F090997	AGGAG	MRIRVKAEETVYKEYFVDVPKHILDVSNFLLSKTYLKNAIHNWVDENESEFDYQDYDSVKEWYAWEEVQHND*
Ga0098048_100075718	F067202	AGGAG	MQYKDIVIAAEDLECHTIDTVAEAIREHILDLDLASSKTLTGFTWRIDVRMRTDNES*
Ga0098048_100075721	F020815	AGGA	MRLYMNKQGDWVGTQAEAKKISASMVDVPTDKPNLLKWLNTFTGAIDDAAKEVIDSKPKTRTVTQKAHAWDTIMQCAKNASINDLTMALIVYMDRVQDIADKQKETQQ*
Ga0098048_100075723	F087896	AGGAG	MNYKTSQGVELSDDGYTKVTVKESLGYGWEATLYNNDRLVLTQDATGETLSIPPESTQTLRDIFKSINEET*
Ga0098048_100075727	F012529	AGGAGG	MLEDKTYKVKVGEWNDAVIYVYERHHKCLNPDDKPEDHRYKHWKEVVTVIPVSHELDDYQDTSGMFHNNVRATVDALAELYSSSPDYEMGVEYVMNTHQYINV*
Ga0098048_100075729	F032993	GGAG	MQTNKYTESLPNMEEPQLPVSMLQHMEQMGLLPVSHDDDGVNNIDLPWRSNTNFFRRDVLDEKGEPLF*
Ga0098048_100075735	F044198	AGGAG	MQPKNVPCHIRIKVEPTQQQKGRACRLHGKDFKSIADAARHWNVNYSWAAEQVSKGWNKEGFPQKYRKSYV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1000757

Overview

Ecosystem & Geography

Associated Families

Sequences