Scaffold Ga0098048_1000741

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000741
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15162
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F005132	Metagenome / Metatranscriptome	411	Y
F008384	Metagenome	334	Y
F032817	Metagenome / Metatranscriptome	179	Y
F092935	Metagenome / Metatranscriptome	107	Y
F101206	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100074114	F005132	AGAAG	MVDIIFIDDNYLYKNFPLPKRLDRGALLALIQLEQYTSIQDLLGSCLYEDLETKVLAETLDADEQELFKLVKYCLAMYSARAAISVLRSETARTKNEENKSDQMSLDAISSTVESKITYINKRIVNYILGKTAIKAIATAEGCDNDLFEAEDVYQDSSVFYPKSSTSDSEC*
Ga0098048_10007412	F101206	N/A	MGILDVKTGSNPNEVQDHVWGDRSRDLFIDAMVKSAAVLNRFTLIDGVKNKVNVPIFDVSTSAFVAGDDCEFADNNVASIQEKEMTVETFNWGFKNCKHVLENSYRGVALKKGQHNPETMDVEFRNWVYDYFAKLAAQKALTLAGADLVTEMEADTDVIDHTSGIATISSSNILDALQGAYQEMSDVMLSAVYGDADREFKPAIFLGTVAYQSFQIAMAEDFASSMTLSSSDGIAEGRIPTYYGMEVIHLASLAANKLFITAPSNLVMLTDDYNDVAAIDSEYEAKENAEYLWGRFKLGFNYMKGSEIVLSQES*
Ga0098048_100074120	F008384	N/A	LKKNTRYNKELVEQEAQLSIEQDAITNELGKFIYQRCIEISGSAFFTNGDDELKQALIDEAVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDKYGQRIKGKVVCIENGEKFTRLVKYVKDDNISKKL*
Ga0098048_100074126	F092935	N/A	MKSTTKERKDSHMNSLILERKLAFANLVRAYLKFNVSEALNIVVEKDGNISINGNYYKLDVSDYTGCTANYIFYNPSSGRLLIQKDDVKKIYKLDVNLYDESVN*
Ga0098048_100074129	F005010	N/A	MIRKYKHIREVQKYLDMLMIDQVNLTIQASRFGWTEELQNQLINSALLIRKYQRRLRLIKM*
Ga0098048_10007414	F032817	N/A	MAFNCSIILSDIDINCNKRTTGGIKKAILALQSDITITFDPADETQVTNVDLLEADTAVFEHNTKDGTTSFSENKNTTNGLGLVATNIVIQSPVVDNKVNKIDYMSRREDIVCILLHNNDSVSISGWMDGLTMNYEASSGTGVSDKSFVNINLSTESGIASLLLDSKSVFTDQTIFD*