Scaffold Ga0098048_1000679

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000679
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15788
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (48.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F040392	Metagenome	162	N
F044802	Metagenome	154	Y
F100005	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100067916	F100005	GAG	MFQGLNRPFFYCIQLISFSPSMPDRHYEKPLPETITTILEDGRVSISVGNITGIVSSMHLIEPKAHQLQKAWLKNQMDLVDASN*
Ga0098048_100067920	F040392	GAGG	MCYGTTVIYRAVTEKQTNATIKTAHNYGGAFISKLSEAALLADPRNRSRVLDAFPEIVSKYGPGSAFYNEYL*
Ga0098048_100067923	F044802	N/A	MSDSAALYRAQENLRMMETCPTWFDHLDKVEAAMAEESRVYDIRVAAGWELDEGGWYAPCPETDQMIHEWDWLDLGLAYPEASK*
Ga0098048_100067925	F006772	AGG	MERLKKAIRTATAGDLQRAAMFLEEAKKVRAGCTNQRAQARRAQSTAWKKKTDSSITW*