Scaffold Ga0098048_1000281

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000281
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25951
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (92.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F013099	Metagenome	274	Y
F016668	Metagenome / Metatranscriptome	245	Y
F017225	Metagenome	242	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100028118	F013099	AGGAG	MIYLLIWFVLVPEQGVRYYHLGTYGNETLCKTALRDAAIMVNDKDETVECIGVQTDD*
Ga0098048_100028120	F000375	GAGG	MSKMYELEPMIMDCWHVCDDLQVVFRQIGDGEREPTYDEMMNTLMGMQQLYQWKFEQLFNKYEDVLRDRQ*
Ga0098048_100028123	F016668	AGGAG	MIPVGQLRLLLTKAGLEYVITRVEGNIAHVNILVAEQPDVHSRTGI*
Ga0098048_10002818	F017225	AGGA	MKNIVTTFNRSLGNGAAMGKAFKEAIDHVIAERDTTVIVKLINACKAKGDTQAERAIRVTFAAIFDGSKVTKTKTGGVAIKIKDATLSNAAVDTLANLVGDETSMRGANWAKAFAGDKAEAELDYIKAATNLLKRGFDPVALIAAIQQQAKQAA*