Scaffold Ga0098048_1000158

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000158
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34239
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (83.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F028792	Metagenome / Metatranscriptome	190	N
F029289	Metagenome / Metatranscriptome	189	N
F029934	Metagenome	187	N
F063191	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100015819	F028792	AGGA	MSNRGDYKVRVRVTTEREVIVEADGFDEAEIKAMVEAVTLVDGYDAEVLWAVEHGSLSDWEKNDGNDN*
Ga0098048_100015820	F029934	GGAG	MATITRTCLACDGGGIAEYDKPVTDFANGGWITSTYGKCDVCDGEGDLHVLSEFTSLDILAFLNESAKILEDADIVDSTLDDIYGHVKDAKDKVREYIKFHGYDGDDR*
Ga0098048_100015822	F002733	AGGAG	MMTKTDKIWLQLTHTEANALMVMLDSEIESCHNYGGGIDLDNWENIDLEAYKLLAFHKFKTWYMENCDG*
Ga0098048_100015824	F029289	GGAG	MRTAYECRHTLAYASPSAITPRYPNAASDPRLTNTADKYFTLRRQIRDKEWSREPVTNAERDKLATLKQALNDDKHYTPNF*
Ga0098048_100015852	F063191	AGGAG	MRQLAIEALRHKYEAQKKNAEYTFKNCTADLERLDAALAEWVGANQKLDALSDIEDDYDFTVHTRHASLYG*