Scaffold Ga0098048_1000128

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000128
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36794
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029448	Metagenome / Metatranscriptome	188	Y
F059988	Metagenome / Metatranscriptome	133	Y
F067802	Metagenome / Metatranscriptome	125	N
F080618	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100012812	F067802	N/A	MIKEIYSRDIDSPKYNNDVIEVTDQLQQLILKVENCLFTRKGDVLGAPNMGCNLDDLIFSLVLNESVIAQRISTQIQTYCSNSSSSQFGVDVRVQFYSTAERNGCLVDIYIDERRVIGALF*
Ga0098048_100012814	F059988	AGGA	MNKFTERRTGMPSVYKATYEEGWELKNLGNDYNENLMRNSFSNYMFRNERLGIFLDEYLKPIMTFWINKVKYLRIYYNFGVPKDYQKIN*
Ga0098048_100012815	F080618	N/A	MANNWQYLNFFDKNGKYLNLDYDKDQDKWTGNVYLPEVSIGLFEVGQLFILQEFINSNTNTKQFGFPHGLEVATGTTGSTNGICNWVAEWETSDPTEIFLFQFDMNFDTGTQTSLEIEPDGPPLKIVSEVEIPLDSDPNYIVSPEGFLITDQITSEALQINVAIRSEVENTFKRTLFIKDDCTGNIIAEILFWGETVGEDERLKVMTQNMGYNILESDSSVFRDTNIKEILPNFEEVNLKRKEIMLEGSNIYPFIGSYKGLVNAIKFFGYDKLDVKEFWRNVDANSPQFGKYIMSNSIDIFNPTVQLNDKSITLPNKRFRKTSLFSLVYRINNIVPDKFDEESLPITEENFDFTIEEILIKLFGLKRKLESEFLPLNARIKDITGEADFFGLLEVVNTISRNDKREIVAGIDTNFKLSTDDCIYMEDLRSFSQFCLASEAIVNQAIINYCNAYIAPLASAQNIGRNLVVGPVSGSYNYPPAPIGPDPNSPLGNIQNGNDFKVSDLADAFLAYFTRYAPKLNKVGAWPDGESSYYLPDKPDIPVGAMTVLKNDSFKNITWDNVNSTWNQLNDANTFFTFDIDPQGVFVGDVFSVTDPATGTGASYTAVVGDTDVEVRDALYNQLALLKSSFTDPWLFWDISKETISTGEVIRLFGQNVDRLNVSCQSSVGSQLLFNQLPGETLFTWDGIERGNFDEIEWTIYKDATDVSPSYYKKIRGPIAQYNNLPIILPYVGVYSVEMKLYDLYNNISSNVKTDFICVENREVEYSGWYQARKLNYTWSSEGSYDWNNYGSLWNLPITPDVTWDQETPSLYASLDRVNAILNNFGLGTSPDFQLLNFQDDGKASFSSPYRWENLTTGGWNDTYHLWWDMTSTTGDTPAFFQFQEVVPETYLKITDVNGETAEHYFDLSINTLADAAASLNISTNRIINKYVYNVVYDASSNQKFIQAVCRYFGVHGDWVYLDIVYANGDRVCPSTGVTGSPFSTGSTGCPSLIYRKGLSKASNPTWNTAKFVNNGKTLPKMTWLMFVYDKCKIPGKTNPRWIIKNTTNSNIADIYFESKYLTYLFKESGKYEITLELTDTNGNKYKKGRNILVIK*
Ga0098048_100012816	F029448	N/A	MAISVTEILGTDSLSGSRLVLNDNFNIVTSEINAMEVYFNPTAGTITNLNDLKTESLRVGLSTVLLDINASTFDVLTNVNMTGNLNLNGGGLFRNDIDPQTLDDIFAGAVPYNIAVGTSTAIPPYTTERVGNSDVANIVTLSLNDGAIGQEIFFVYSQAQTGTVRITGAVTPLVLSGGNTNIDLAAQGQTVHLLCVDDGTGNGVWFIVGGDAYTLS*