Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1000123 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1000123 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37084
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (60.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

37084

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (60.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010695	Metagenome / Metatranscriptome	300	Y
F011679	Metagenome / Metatranscriptome	288	Y
F043948	Metagenome / Metatranscriptome	155	Y
F065844	Metagenome / Metatranscriptome	127	N
F087182	Metagenome	110	Y
F089420	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100012313	F089420	AGTAGG	VSSYIQIPHDWKWPECNHPIEKWCKNCDFDCDTYERIPHFRKYKEIYMWTEKEFDKEMNKRQYKRNSKVHGK*
Ga0098048_10001233	F065844	N/A	MKINNYIEDGFSKVCDVILHPDRDDQWYYENVDYNFVGPDKKSWLYFIVKDNNIVKCGESGNPLLLETKGKNPRWKKGTFSRLGRYINGCTTDTVIREELYSAVKKGKVSVWAKQLPVTTVTVNVMGEEKIVERSIHKDLEMVYLDHFVTEYGNLPPLNKGRK*
Ga0098048_100012337	F043948	GGAG	MATVKKYNLAGVSTSLELGKQGSYITGNADAIGFYTSGDALQKIAIANATAATEAVTKAQLDELAGDLVQHVTLDVDFNDTGASNIATIAAGSRILSVTVDVPGAWTNGGAGDYVEVGDTANGSRFIRSGDIDVTKVGQYHSQYQYEYSAESVMTVEVTNGAATAGTATVSIVLASDSVSVTDYGSINSAQNSNNDLGNIS*
Ga0098048_10001235	F011679	GGAGG	MIKDRNTTVLSKDYQPTETLKRFIERCTGAKLSPVARTDNAFWISGDKRGDYYEQKYYKIVFGSVTQVSYTPNRSEKTGYGFDIQTVGDLNGWQLMGEYRKMVKEEMANYKKESA*
Ga0098048_100012361	F087182	N/A	VGQYTDKINAIAEDFATLEYYEKISALEGRDGMLILHYHHGGKTITSRKDTQYEEYKVKEGETLILPPTDQDYVALKERYTQESWGDKIGKFWKKITNRKVNFNNYD*
Ga0098048_100012363	F010695	GGAG	MQNLNTTNQSKDKITAPLGYWIGTLTCYNANNESSANIQLTALEEMWYTHEENIDHPEGSEYPVSINVPHMKVMRDRVFDSVLNRTGINVRDFDSIIHASTSPGRDKDGNIMDHAGSNLVRNV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1000123

Overview

Ecosystem & Geography

Associated Families

Sequences