Scaffold Ga0098048_1000107

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000107
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39507
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (21.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008563	Metagenome / Metatranscriptome	331	Y
F010105	Metagenome / Metatranscriptome	308	Y
F012164	Metagenome / Metatranscriptome	283	Y
F014036	Metagenome / Metatranscriptome	266	Y
F051960	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100010720	F051960	N/A	MSKETETKVVEMTTEKAPQTLEQLKAREAELDKINEDLIKEMQVREYEIDFKTKKVFDRLLKFLEKDAPWGHTTATGLIMLYHNLREAKELVKEKEFKGLIPVRSTSVTILWQMVTKMTGTGFYEAKSFVELMANVGESLSEAVQKVQEDNQALRDNHAELALLQQEIDKVTVEGPIAE*
Ga0098048_100010740	F014036	GAG	MILEFFGILFILLLSFVFHMVVYEDDWVEAWYWKVLIGGGIITVVFFAIMGY*
Ga0098048_100010742	F012164	GGA	MSTELNTLKGKFHSTKTGKLENTELSLTRFSGGKEGMKLQLTLRDQGDFFTHIALNKEELKTLIKEIQENFDI*
Ga0098048_100010746	F008563	AGG	MPQKIKLVSHMGIAFANIGGQKYLFPGWIPVEDHISFDDVEVTNPYDNIKKEIFQVTGSTGNKYTVTKNGNRLSCDCPAGKFRGTCKHSKQIAAELA*
Ga0098048_100010748	F010105	N/A	MEHIKEYESFVNENLDTIKKMVLDFAEKNGKSKWKELHSVILKQKGLDPNDRDNRGQFSSYFSGGSSWQRGKGGVNGRDANSHGLLMRPTKKDPRYLEKDGKDYIVKVWDGKSKLA*