Scaffold Ga0098048_1000073

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000073
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46880
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (11.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004370	Metagenome / Metatranscriptome	441	Y
F034539	Metagenome / Metatranscriptome	174	Y
F050748	Metagenome / Metatranscriptome	145	N
F051536	Metagenome / Metatranscriptome	144	Y
F052947	Metagenome / Metatranscriptome	142	Y
F057746	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100007314	F051536	N/A	MMLIDNTFELGIPTHIQFTLFKYDYFDSIIITRVKKECKNISKVNGEFTVTKSSFLNAIKTSKRIKAEIEKAEDFGYIPIPSIKPNSVYFLTSIFSRLPNLNTLTFKINNDKKYTRLIKNAAGHDIISFHFNIIEGIFDLTKVMDRKELDIFNKTLIEFKILENKYLSRKPYFYMKATAIIDILTVMEAEGKLSTFNILDHIDDKLEEDDPILIVKTDYTPF*
Ga0098048_100007317	F052947	N/A	MRSQFLKKLIKKFPNHMELGGAVARYYDLRQSKLSKEECEEIVLNSSFRFN*
Ga0098048_100007320	F004370	N/A	MYKVRKINFGWYKRRHGILLENLPPLKQKLLLEHNHMKWLDSDIQAFEIIFKVEDMNEHEKNPNRILWNPFRETFTNIKELEKDSDLVDWNCGICKVEIKSRMDSKKVENFVCGKCVEAHNSRNSRVDQRIIDSSVKFMKHCKSLLKGEQREFMTYVRRSSKA*
Ga0098048_100007325	F057746	N/A	MAIVGSFQIDLDIYLKENKGRSGASKQSDSSLSTIGDKARGDLENGKMYSFEYFTPEETFYDTYPIVLGLGKSIDNHQLGLNLHYIPYEARIPFLSDVYRSFKDTILRETNAAPGNPNRQSRLSEFTYDNLKQSLGKKYNVTYAIRQYRIDRIRKPRVMSYGDWYIGAVNNENHFFGGNINDAQALYYKNI*
Ga0098048_100007335	F034539	AGAAG	MLPKNLNTAKLKVKHVLGNHTTLPTYPDAEDITYELIRDYCGKVAKEIKFTNVSLQKKYSLTDEKVNEILMTLIKKKIIEVSLSNSAYTTYEIITNPYE*
Ga0098048_100007339	F002407	N/A	METKINKIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVNTPTSDIFDADISDPVKVSFYNGTKVIDALSHFNGDVQGRIKYTEYDGELMASDFILENEDLQINLACTDPSLSFMEMSKEETDRAFGTDSKMFSFDLLTTHVDKMKSLFNLDKDEDIFTLYIGEKGINIKGTSYDATLCHSYDSDVEKGAKVVIYKKYINLLDKENYKVSVCENKVVFKSLDTNTHLTVAVAITDED*
Ga0098048_100007340	F050748	N/A	MKDNALAIGISSLEFTNILCSYYPKGIKENFDIYLFVDNNKIDIDKLQCIFKEHDLDIFINAKIIILKDVYDHYIEKHQYKGNAKKFLLNHGCLFKILMPIYLREMFGVKRTYVSDDDVFILNDLSYMWTKYKEFGIKKENLFYIRNKNKYDVMNAFNEIFESDFTLDQMNGLAINAGNIIYDEDPKLEYYFERFMKHPFIHHMFFDFSGYTSWTVEQRFHHFNIHRYLAEGKEVKFLESKDLRLMQNLDKDMKAGEPPEKYLKEVVPSLIHYAIGTKKPLWLNDFLPGLKWRYGFDYKAKYELKDILYNKDWRPPSFKSVQKKQKELKTKSVF*