Scaffold Ga0098048_1000034

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000034
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74130
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (77.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009293	Metagenome / Metatranscriptome	320	Y
F042025	Metagenome / Metatranscriptome	159	Y
F055215	Metagenome / Metatranscriptome	139	N
F058462	Metagenome / Metatranscriptome	135	Y
F068147	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_1000034103	F058462	AGGA	MTTFDTPINLTTTGQYPIRAHMVFDNIGPNNCEDILWQNVIDSVSEIEGNEMGVSVTQSYQYTKLNTEPTIMVRWQGIKTENGNEFRIGLGKGIPGSKMTPPIMSGNMKTGVQVNGTLSIQSVKLGCVDGQFAIERDGKWYAIQIGEAIE*
Ga0098048_100003411	F055215	AGGA	MKVSDILKLPDIKIGDELLVGKFKNRKAVVTGFGVDDNNQPVLKTNKGDQKLFKPRIVKLMDK*
Ga0098048_1000034112	F009293	GGAG	MTRIAKDIIAGDDFVVNVFDAKKEDLTDNFNRGRLYKAFESGWPVVIQNLTIEGLDYDYYDALPDWTIPDNKWIMPWYNSHIKNRDRLRDERNWSEEEIDIFHKKHKQSNNAWNILFDKLFPNYETTERMLSHRYNTLVENKLHLDELDEQHTGQEQQIRMFVQLDKKRPRVLTFGPDLEQLWNQYKDEFKLEDIDRTNVHSFITEMRNRCVWNDKMWDQFHHPLHYITFNPGDIWFFNAQWITHQIVFGTKLQCFEADIKNSSLLFPEMCMSNRIKNL*
Ga0098048_100003471	F042025	N/A	MKEFVQNMPVQLLTQWRTPTPSPNDDFALMEDISKNGMQDPIVLGVGIWSRKVRLDTGNHRIYLLPRMGMTHLPVVARVWNYCSFTNGNGDHSFDCPEITVKKEWLEKEYYAKPSDVIDIMALLLKI*
Ga0098048_100003499	F068147	AGG	MIKGQKNWDYQYVSDCEVVNVFIPRNTHLRGYEELKQRLLLLQQVECDNHLTSSIVNLYNTVSIDWIEHVRKMGHKYVAFWFDGCWPKSEGIEKKILNYIKRLEKKDWITAVHPKTLDSLMLLNIDEFIAWPAKAPNFGNYQFWAENWLGDCTVELSPTIQKNIVVGAPQTDPQNFLDGLMGKEYTDDTIVWGARVIIKRKNIPNSPVYFVNTEPLEKDYNERLKGVFFKQYVGTTAGFKLLYNAYNYGFDIDSTKFVWYDFDAHSVKFKRLMVEKWDGFDYPAFVEQYCKDNPDANSMLLKDVHKQWLNIVEQFDGMDSWLDFWMQIKLCKHEFIEADIIHNHKKITDLLDNNASTFFWTSNIYSYVLLKAISKPFTLERSFAELMVRLQQIDNCWFFGTDPNDNNLTCDVKCVLGYSTNDSIG*