Scaffold Ga0098048_1000005

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000005
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 211489
• Total Scaffold Genes: 268
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 214 (79.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040079	Metagenome / Metatranscriptome	162	Y
F048918	Metagenome / Metatranscriptome	147	N
F055647	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_1000005149	F048918	GGTGG	MANVHYLKRSHNEAVIKVYVTDSSGDTIDVALSDLIADGETFDAGTASVTIKEIFWGCKHNKHIDISRWDGANAHGHYYLVNSGSHEYVGFVDDVYSDRDIRIIGDSEFHCIMKLTKVSGYS*
Ga0098048_1000005245	F055647	N/A	MHIVRKKSGEIIAIASRYEDAIAIADGTRIDKTDYVVQESTDQQELAEVYRSYYGTRSL*
Ga0098048_100000580	F040079	AGG	MMFEVGMGFLRQYRDYTAKGEITSISTDADDETLITVMYTDGAVKTYTENCVEQNLGRRMIVTEEVIW*