NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098040_1257794

Scaffold Ga0098040_1257794


Overview

Basic Information
Taxon OID3300006751 Open in IMG/M
Scaffold IDGa0098040_1257794 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003515Metagenome / Metatranscriptome482Y
F050302Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0098040_12577941F003515N/AMKTLIIALTLLVASSSLAGPPKGMVRQMIPFPAMCLPATVAENHFAVLMGALITDYGVHISMTFSASLDQSRRVAIIENPATGLAGVLMITDEQTCIAFSGEDRQEFMRPPDHPIGEANQDTKA*
Ga0098040_12577942F050302AGGAMNVDSRIITLALFLIAQSVGAIWWASGLSSEVNKSSGLVDKS

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