NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098040_1199841

Scaffold Ga0098040_1199841


Overview

Basic Information
Taxon OID3300006751 Open in IMG/M
Scaffold IDGa0098040_1199841 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)584
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009842Metagenome312Y
F018193Metagenome236N

Sequences

Protein IDFamilyRBSSequence
Ga0098040_11998411F018193GAGMAEPQAKENVVFLNDKEIKVADLSDEQKYFHSQIIDLRNQKARIAFQMDQVMPSLKFFEEAFIKSTQEKADE
Ga0098040_11998412F009842GGAGMAVTKTLIGAAPSNKDGEVQQWNFLMKYEEGADATYYTSDMTITLPAADAMMDIVNFTPKAEASWTLSEITALCPIAQWDEVFGNQYNDAITNPPDNPVPDPNYVIPS*

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