Scaffold Ga0098040_1131534

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1131534
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 745
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039706	Metagenome / Metatranscriptome	163	N
F103416	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_11315341	F103416	AGGA	MARTYQYRPIKYTVQDHSGAGVLTTAISADVYLVHISTSVDAYIKLEGTAASKDGMLLSADDSITMKTSPSDTVSAYATGAGQISVTEMSS*
Ga0098040_11315342	F039706	GAGG	MRTLNDYFIMGGNMTAIQTADNASPVCVIPDGGKLKEIYMNVHTVIDATTTFDIMKNGTDTTVDATLADATADESGIALAIGGEVLVDAGDAIHIKSNGEQTAATTADVSYVIRR*