Scaffold Ga0098040_1023965

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1023965
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016597	Metagenome / Metatranscriptome	246	N
F023963	Metagenome / Metatranscriptome	208	Y
F043628	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_10239651	F043628	N/A	MAAPRNQGLITEAGLFIISESGDYIVTEAFTTQGGGKAKPTEIKEDNSELWEIGASIYRINDNSLKEPVNIKKYITEENDIKVIIGENIYLKSSDVITENVTAK
Ga0098040_10239652	F023963	GGAG	MATPSNVHQKSIEFDDVTLFSIDKAVYDWFNTKHATNIRGRKVPVTFGSWERFAQMQDNKYDDNLNRMRDPSGMLILPMVSIRRGDVTYNTERFVFQQADGAPRIKISERVAMSNFDADRRVPFDGPHMYSADRRRSDAPVMEIATVPYPDFVTIPYTITFWASYVRHANYFNDKIWQNAYPTDLTYKGYYFYAFIDSSTNENNEENYTDEERIIRSSFTMTVDGYLLKKNDVNVTRTASKMLMSEGYVEAPSMSTPGYKSIDEILTHERAKAPHQYPEPMPPGLGKVNYGSLNNSDFGLEQYNQPQQARVGGGKIDYKNPGARSLDSY*
Ga0098040_10239653	F016597	GGAG	MPLDRDSIPHEWEGTGNHGTFPFASSTGDSSYGLFFTPREMELFNDYNTELLGIIAQTGVNYYRIEPDSSDPNSIYGESEVKVTRDPVQVMSWVMMDEPETETNSFTVDVRRRIELYMHKDRLTELDLVPRMGDFVEYDNQYFEIQRCGVPNFVFSYPQTKLGVIARCMSVREGVFDPNRDFVNKEYVGDSENPY*