Scaffold Ga0098040_1019770

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1019770
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2207
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016083	Metagenome / Metatranscriptome	250	Y
F028832	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_10197702	F028832	AGCAG	MLVRKCAKGNKIYIFKSRTKDKVSYKFSDDETVSFDAQNKSYIVTSDGAVVKRTNSFITAQSSYDVECKKEHSDTIGPIKIGKHKLVNGIATEIK*
Ga0098040_10197705	F016083	AGGAG	MAIRTGIRRYTADEATSLAIGQMGFDVVAEHDSDTSEPPTDCWVAIQALGKGGGDAAVEYLKLKVTTNIGDDISSWFYMVPGEIFYGNFSGIINHTDSTATCIAYRG*