Scaffold Ga0098040_1001730

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1001730
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9207
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012033	Metagenome	284	Y
F014627	Metagenome	261	Y
F015480	Metagenome	254	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F020018	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_100173012	F016410	N/A	MRKFSSRKEQLEWADKLLRKLSDKNTGGVTPIIKSMITDNYIRRLKK*
Ga0098040_100173015	F014627	GAG	MGKMKEKLIEDMMMHPDFYIEMEDYDFWIQCRKEEILEREGKPAIKLIRKGKYVKRRNKEKSSKI*
Ga0098040_100173019	F012033	AGGAG	MEKKLYYHKEHHLSGKIHFKYVGNITEDGAMILQQKTGYHPAGYGFYGFACINNVARWWCANSCD*
Ga0098040_100173020	F015480	AGGAG	VNLPTLENMHVSERTENIYAQIIAEEDIRRSYGEEIILPQRTSFIRENTF*
Ga0098040_10017303	F020018	GGAG	MKMIQITKWLDPNDETWFKGVYITTGEWLMIEKQRLSKLTKKRVVISTDSSGAKAIFRERIK*
Ga0098040_10017309	F016673	N/A	MVSESSLEDIVIKSYLELYLRSLNESRSHKFITIIKNRMLELIKRKQLRNQNQ*