Scaffold Ga0098040_1000963

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1000963
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12997
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017322	Metagenome	241	Y
F026408	Metagenome / Metatranscriptome	198	Y
F048970	Metagenome	147	Y
F063091	Metagenome	130	Y
F081436	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_100096311	F017322	N/A	MKLIMESWRKFLKEGISDVVYHYTSGLNKAAQILEENKFMASGGFTKEVETELGKGKLYYFSTARTPVNAYTGNYPQGAIFKLDGRALSEKYKGAPVDYWADPERGKSSKKAANPGSQGTDAFEAEDRILLNEPYIEDADRYIDEIHFAVPLYSKEKEMFSNKMERRVKSSLEWYQIDGIERGVAVAEQRGIPYYIHIDKSTWPHVEVGKKKALTNLADFKQEIEKSGVKINSKPGPLRTPEEQAEYDKLVGDRVRKETGEDEVFLFVQAAQDILAGKEQFEGANVQGKVDYLDEKGRKEKGSGFFRALAGHPDATGRFVRDINNPLHNVSSNPKARKTLEMLASLMRSTKQKTIKDFETYINQVYKKNHPDGDPTGYRNI*
Ga0098040_100096316	F048970	AGGA	MKIKKARLREIVRGVVQEAAKEGQMQKIYRRSFARMGKKVSSGGNKNTPPFTQKIPKIGKSGPPGGE*
Ga0098040_100096319	F026408	AGGA	VSNRRGMTLLLVLVMSALIGLSAMLLFSTVNLEMMIAGNNRRISQAKISAASGLSHFTALGLTYNTLREQAGDRQTLQILPETQLGAKTSYEVKVHFYPRLSERQYVVESTGYYKKADQIISVHPIKALFEGEQ*
Ga0098040_100096320	F063091	AGGA	MLYKSLFLLVFANLFNQAYNLEQIQCPKWVPGSDQVLPQGVSLSPELELENRVRCYCEVVKVKEAQCLARHIPATICKARTRIWVENNLKLKEAFQLVNGISPAPRRDRMISVEP*
Ga0098040_10009639	F081436	N/A	MKITKDLIRSIIKEELNEAFRMEADFAPGTMVNWNVLAKVVKTTSSGRQKVDYERMTMTGAVKELIRSGGAVGGVAIVVDPDGNSHEVEISELSHA*