NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098040_1000818

Scaffold Ga0098040_1000818


Overview

Basic Information
Taxon OID3300006751 Open in IMG/M
Scaffold IDGa0098040_1000818 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13999
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (77.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010920Metagenome / Metatranscriptome297Y
F012033Metagenome284Y
F014627Metagenome261Y
F016673Metagenome245Y
F020018Metagenome226Y
F025517Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0098040_100081810F014627AGGAGMGKVKKMLEEDMRLHPELYNGHAEEEFWTQCRKEELLEREGKPPIKIIRSNKSNAKIKKRN*
Ga0098040_100081814F010920GGAGMKTFDVWLSYPIKVNAEDEDHVREIIMANEHLRNAPDLKLEIKEILNES*
Ga0098040_100081816F016673N/AMVSESSLEDIVIKSYLELYLRSLNESRSHKFITLIKNRMLELIKRKQLRNQTQ*
Ga0098040_100081824F020018GGAGMKMIQITKWLNPDDNTWYKGTYITTREWLMIEKERLSKLTKKRVVIQTDPKGAKAIFREKIK*
Ga0098040_10008183F012033GGAMERKLSYNKDYTHPGSIYFKYVGDITEDGAMKLQERVGYHPAGYGFYGFVFINGVARWNCSNSCD*
Ga0098040_100081830F025517N/AMYGVNAKLPKDYFQCHMCRITKIQEMYIWGNFAILPKHPYKEYRICKKCAIRENGKRKKLENIIDERTKQWLKSQ*

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