Scaffold Ga0098040_1000527

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1000527
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17587
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (88.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F008590	Metagenome	331	Y
F054844	Metagenome	139	Y
F064211	Metagenome	129	Y
F067640	Metagenome	125	Y
F074152	Metagenome	120	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_10005271	F054844	GGAGG	MKVGDLVRFRGSVGLVMGACKKRWAKPADVWVMWTDEDRPKIESGLLLE
Ga0098040_100052716	F105146	GGAGG	VKVGSIVKSKYTIGGHRARMGIVIKLRAGAYEGQPLAQVFWPHRSDTGWVEAKDMEVINESR*
Ga0098040_100052717	F004771	N/A	VLGIKIGDLVKMKGSQYDTGIVGIVIDRDYHCSSIQIGIKWLGGSGKVDWEPESWLEVVSESR*
Ga0098040_10005273	F008590	AGGA	MKPGDLVTYAFQAARWRKGLSVNVGLIVEVGKYTGNTDVKVLWTNTPNAQTEKSSGLMFVKDIRIP*
Ga0098040_100052743	F074152	N/A	MKLYLTTFVLTGIVDSTDQFFASVEINLNPPTVEASMAVLPLHAFPCEIQEGDTFYILKLTEDSTPVIVCELGANEPYDGD*
Ga0098040_10005275	F067640	GGAG	MIEVGSLLRMWGNHSKWIALDEIADTVLVVSQKTNHKMWANKAAFEVIG*
Ga0098040_100052750	F064211	GGAG	MKAGQIKMWLDQGPAILMMECLVEAAALTPEEYEKQGGHKPEQGWVIHLLQTGEMLTVHEETLHNGEMDV*