Scaffold Ga0098040_1000346

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1000346
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21520
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y
F019032	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_100034616	F008105	N/A	MNFFQLQNKLFYSKKTKSEELDVEGNQTFIPFLLNRWLSFYNNDMAVFTNDTLNRFSSIFENKQDTYNLYYYFIPSLKWKKISYIKKKKKEEVEETENLNLIAKNKNISTRELLQYVELNKNCTK*
Ga0098040_100034617	F014794	N/A	MATASIDNLAPTRSLIDLTKSDRGDFGFGDYELSFIFDDILLIEYIDETDEGDLSRNGIVIPTNALTKAWRKGKVVLAGPDTKYAKEGDVVVFPNNMGVTISGVEVTDKGQVKKGIFLNEERMFGICKKRDVSSKSNT*
Ga0098040_100034618	F018622	N/A	MLVQKVTLDSLLLNNVCEVRFPRRIILAGQAPTRRMLCTMSQTLLNSINGRISLNYFPPKGPPKPYLGPDNLAVGWDIIMQDYRNINMNSCDLIQEIPADDQFWEYFNENIYPMSPAQKFNFMNS*
Ga0098040_100034619	F018815	N/A	MNVCLEKITDALKPFLLRDVIIKTDKKVLKKGLLKIFQIKQYYINFTLEFNGLNKSYEIPYPYSIDVNDEEDLAILNYHLSSFIPKKQLNKVKCLDSSSKSKIYDNLIYILPSE*
Ga0098040_100034627	F019032	N/A	MANRKKKIVKFIEHISNKNYAEAHKYLKSIINDKITTRISKAAEKPLF*