Scaffold Ga0098040_1000265

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1000265
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24884
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (94.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F012400	Metagenome	281	Y
F024571	Metagenome	205	Y
F055207	Metagenome	139	Y
F080510	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_100026512	F055207	GGAG	MNRGFESIADIVNDIADRALGGFDDFEDDEYHYPRMILNWYKSEDCPEPLNEEVYQQVMRENDERVYRAIWLKIHSRLY*
Ga0098040_100026515	F012400	AGGAG	MKYTIKKFMGDDQYSWAVFRAQDVKGMRSPICDPYIQPVINGLSRADAQYHKKNLEAM*
Ga0098040_100026535	F024571	AGGAGG	MDADLNVDVIDNETGEIYREGVMLINAHIFIAKEAGKIVQDEVEIIDLDDIDGGGQMEVRSIYVDFPEEKLKRELSADAIIRARQFWQYENGGGQVRNRS*
Ga0098040_100026549	F010027	AGGAGG	MATTANSRYSFEISGSEVLAPHPKSGLHTVVVQGICSDSEGGTFDFVATNNLDMRYPERFKVNWNGNKARMPEVVGHGLDDERKVGRSISEGLYFTRGARIAIARKCKSLFPLNRLTAVAAAASDEEDAS*
Ga0098040_10002659	F080510	AGAAGG	MSWIEEDGLRRNKQGILLRKNQDRAPNLNVGDRFFDCANGRWATLLRIRPVNEALGAPFEALYDGCDRFTAFIGVAMHCDIGEIRHESR*