Scaffold Ga0098058_1138888

Overview

Basic Information

• Taxon OID: 3300006750
• Scaffold ID: Ga0098058_1138888
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 645
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047715	Metagenome	149	N
F064782	Metagenome / Metatranscriptome	128	N
F067816	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098058_11388881	F067816	N/A	HSQYPPPCVPLHKIKEVNMTMDVYYEDKIGSIPAVEVDIILVLADYESANLTAPSARREIARSVHRMLLAKNYVKRQKQDSGA*
Ga0098058_11388882	F047715	GGAG	MYIDYCPKCTMSKDDPVLLKSYGEAYKDIMSSTVKMEWFMKCPRCEQLFDGGDLYIEREHGLKSRSGIKEY*
Ga0098058_11388883	F064782	GAG	MDLKAEVVLKNIRKEIQKIRDRNRKMKNHPYAENTMVMIGLMKAVNIVEGLRDEEMEKLIDWRKEQKKLVS