Scaffold Ga0098058_1135612

Overview

Basic Information

• Taxon OID: 3300006750
• Scaffold ID: Ga0098058_1135612
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 654
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F022555	Metagenome	214	Y
F081542	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098058_11356121	F081542	GGAGG	MNIFAIEGDEETGQIDWEKSAQSQDNLRVVKMILES
Ga0098058_11356122	F022555	AGGAG	MAIAPKFKPGQLVRYNQGLHDLVGLVKSTQFARRRGEPVFVLVQWCNNRAQEEYIPQAELLLVEGS*
Ga0098058_11356123	F006383	GGAGG	MLDSSNKMWQVQQPGTILRARHSAKYGQLALVLARAYAGPKPSNGYPPRQYVKMQWLGTGERFEEMLTNAHNCFDIVSSCDTLGPEEN*