Scaffold Ga0098058_1044442

Overview

Basic Information

• Taxon OID: 3300006750
• Scaffold ID: Ga0098058_1044442
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1264
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011121	Metagenome / Metatranscriptome	295	Y
F082536	Metagenome	113	N
F105893	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098058_10444422	F011121	AGGAG	MPASPISKEITLPDNWEQLQKTMIPDQATGCYWSVWYNIVGHLPGKSKGMASLMWCAIGEDPSVNDNWCHAEEMDESCRNVLYAIESVYKVSFHECMWVKMGATEVFPARQ*
Ga0098058_10444423	F082536	AGGAG	MSKQGLAWSKLNEFISKNTGMHMQDLPDFDIHNWVEDDMTEKEIEGIIPDMAWDVLDNAGMDRKTVNTICYGEDCDE*
Ga0098058_10444425	F105893	AGGAG	MSEYNVKLNNMETYAYLMSHFKMTCYEAADEMKKRGLFDEHVATVHEGVSNYMELINK