Scaffold Ga0098058_1038746

Overview

Basic Information

• Taxon OID: 3300006750
• Scaffold ID: Ga0098058_1038746
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1367
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098058_10387461	F029468	N/A	STNGVKFEEMKVRPKEQAEHEFDKDDVEEHQLKMNVACKDFVSEFIDCEGDVYYSTAMKAMNSVWQYEQSVKNTACTMVGPEWDHDKGVVGRWRYPHLRKGND*
Ga0098058_10387462	F024807	GAG	MTKRSLPFDLVYHDKDQQLTLALHDNPVTLTRDEVDTLIFHLDSFLFDMDKARKPQPSAEGADTHAEAHGEMLMAQFDNDPNPYHGDYSED*
Ga0098058_10387464	F015347	GAGG	MSTLHLRCQRNAKMLLESASEECKQMHMDTKEDAMYPDMDTIYSSAEEMRRFADRLNNFADELMIVYRKMDHHQAMIDLDDLRSESYAN*