Scaffold Ga0098058_1024052

Overview

Basic Information

• Taxon OID: 3300006750
• Scaffold ID: Ga0098058_1024052
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1779
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020443	Metagenome	224	Y
F041817	Metagenome	159	Y
F043977	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098058_10240522	F043977	GGAG	MAISANIVTMGGLAATGAYLRISDIIIKKIIDSDSPGYGKWHMTYGVSCYVSAAERAEDSPTTLVAPSVDRFKVVSDTEPSDPYAAAYADLKTQSAVNNASDLV*
Ga0098058_10240523	F041817	GAG	VNRINWQNLPSDPTGWTFADTKKAYRQVWNQLDECKRMRHAVDATLRARSVEVRGTKEDLRKAKGQIVTLTKKEHQKSKEKSAAAYATTAATMLIIGYQVVEVFGGWGRWAPVFEHEATIGVLQVMIGSILAFAMRPLQH*
Ga0098058_10240524	F020443	GAGG	MKNLIKVGIGRTEVAKTGKGAVVGGVGAIAYSLISSVGYMPEAFTAPDVMPYVVAGLSTGINFIRQFFTNHLS*