Scaffold Ga0098042_1087074

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1087074
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 802
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024653	Metagenome	205	Y
F038713	Metagenome	165	Y
F041144	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10870741	F024653	N/A	RRMKMSRDIDTIPTVRRHIVSYKIYAEWSDNPKMVQLDHEMDGHLENTFNDWLRDIEDEEDLK**
Ga0098042_10870742	F041144	AGGAGG	MIDDAITTVGFALQSYVNTCYHEDTEENKAEREELTLAWSIIKKHLKENEE*YL*
Ga0098042_10870743	F038713	AGGAG	MIFVKFTIDYGGYEYLDYAWFKDYGEAHYENGESITDKDIIQEVYGEGRGDEDFEENFNKETNTYTDYNDDVISVYKVQEMTQKELNVLVKMGVLYK**