Scaffold Ga0098042_1036087

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1036087
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1384
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10360871	F021674	GAGG	MERETYNSRLKTNPEDIPVGSLLRVKKHCRKNNIVKENGEFAILVERDGGKYISHDVLYPTGRRTVFIPMNWEVVSYANQR*
Ga0098042_10360872	F069451	GGAG	VKPGDLVRIRKSAITAYSTLWFIDLADSKAPLLLMEQLNRRHWKVMKPDGNTFFVEEENLTKRMW*
Ga0098042_10360873	F006867	AGGAG	MLYGKELVESIRKRCEIQPGMLVVSLAAGENEIPKVAVVMEVSPACEFDRDYEGAEGDIFYKCQPADGSPVFVDYAQNLREYS*
Ga0098042_10360875	F022555	GGAG	VKQGDLVKYDHHSNPMLGLVKSVTDYSVGPTLVLVQWCGKYRQSEEYIYQRDLKVVGNQ*