Scaffold Ga0098042_1026370

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1026370
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1674
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y
F048640	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10263701	F027536	GGAGG	MRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDDEAKLHEQEQKLYELDKEEGILWVPNF*
Ga0098042_10263702	F029123	AGGAG	MSYEVWFGKDGKWFGYHSFKHRMEAVACELKYLKIFRDLTVEIRRREHAS*
Ga0098042_10263703	F006217	GGA	MIELLLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWGSDKTYYIGSDKQKRSKC*
Ga0098042_10263704	F005813	GAGG	MKLYKNSDGVWAGTQADARKMCGKDYSTVDVPTDKPSLLEFLNLHQVGSFTSNGKEEIASEPNTYDKKAMSWFRWAHDCMCRGQYEDAKEMLRKGLIDDRTTTSDG*
Ga0098042_10263706	F048640	GGAG	MQPKELNGHARCKHKPTLIQKQLECRLFGKTFRSVADAAREYELYPSTAYQWHHEGKYRETFPKTKRWDKWRTKHEVADTHTTN*