Scaffold Ga0098042_1023456

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1023456
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1794
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031250	Metagenome	183	Y
F057434	Metagenome	136	N
F061908	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10234562	F031250	AGGA	MEGIYNKENLFAEFAMQKTNEQKVKFLQDMKQLKKDQPHLFRGTSITQKNFDNLIVEWSKDKPWYEINQENKRRLKASNSVEGEDVSL*
Ga0098042_10234563	F057434	N/A	MIHLIYTRNNYDMDSVGGHFESHITLIRNVPYSHLSRLLVNKNDPELLKECDTKYFEYQESKGITDTCFHSEISIVDDEDYFKTYKDVYPDSYTISPGLIPAREDYFYDYGQKTNFMLIHDYDPNYTWFGKDWTQEMINAEYKKRELDNQARV*
Ga0098042_10234564	F061908	N/A	MSVRQEKLYNNMTQQEQDTFDYLVHVKDRNIDDVFFFLHSTFNPSRDDFKKPSFANLSTKQVINTCHQLQLKDAA*