Scaffold Ga0098042_1017491

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1017491
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2145
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F031662	Metagenome / Metatranscriptome	182	Y
F038411	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10174913	F020533	AGG	MQDAIMLDQDDLVAEFERKVRDKKIFFEVINPGQVESKGVDIAAMIKENNKLKSELRIFKDIVDRSITADARRGFNG*
Ga0098042_10174915	F031662	AGGAG	MDFKIEKNVPVRTFNSPFCEALDQLEVGDSIGNLTKKEVYRYRPNFYTPTFRDRKFTFKKETGTMYRIWRIA*
Ga0098042_10174917	F038411	AGGAG	MTQHTQKVEQVRRRNRLDNWRKGIKFSLGETINNGEDVKHTTIYNDDSQTIEYLKSDRKTETIPSPHSEDDLVDLMMRGETATAEAIIRKLAQGEDNE*