Scaffold Ga0098042_1016488

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1016488
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2224
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F074037	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10164883	F074037	N/A	METSKQQKGIRAELLAAIDFLGKPNTHVYYDLGGKGPADLVVVNSATGTVDLYDVKKKSYRMMKGKMRLINRVKNKSAKNLDVKVLYV*
Ga0098042_10164884	F003020	AGGAG	MPDTSSFKSVSVSVDTHKQLKTLAENRFEVPVSIQKIIDFLLEKESKIKNKTTRRKNNV*
Ga0098042_10164886	F004988	N/A	MPKLVETICPRCNGNGYIVVQKKDIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRRNVEGGRESIAKWSGETLPEKGK*