Scaffold Ga0098042_1014031

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1014031
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2453
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_101403110	F008925	AGGAG	MTNKSKPTIDTVTLNLINKLKKIDDTINEGAWEYIHLGDIIRFQDAFQEAISHYDLKKEGGIHDYGANQGKYQEFWHSDYVCWSDPNAFDPSKVEEEDDE*
Ga0098042_10140314	F021207	GGAGG	MSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMTIFRHNTNGDYVIPTMPNEEGNWKVHKSSATKEEVMELIKGGRVIWNKDVI*
Ga0098042_10140315	F105326	GGAGG	MEQRRNLTPREHWELHQSLWHMLGCDMQLKYRDRTTAVYVDNKAKLKYTYSTKGFIKWFPIPKEDKI*
Ga0098042_10140317	F013187	N/A	MTLQNGRGRKEMPTKAKIKKKPKRNTWVYIYGDEFQEIFEHFGFDFPNPDDRIKLKFVKYETREMQDG*
Ga0098042_10140318	F012581	GGAG	MAKYTLYAKKVYYYRKEITAQDSKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDDGR*