NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098042_1009520

Scaffold Ga0098042_1009520


Overview

Basic Information
Taxon OID3300006749 Open in IMG/M
Scaffold IDGa0098042_1009520 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3099
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016061Metagenome250Y
F028350Metagenome / Metatranscriptome192Y
F042075Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0098042_10095202F042075GAGGMTIHQFTTSEPNPPFAVMRRDMYADYCFDCSCEGIDPIDWHSWKVLVSELLAKGDGEAWACMYAQKVVFDRFHSN*
Ga0098042_10095205F028350GAGGMRIKPNIVNPVARAMALSRRRTQAVPDKTKYNRKKDKADANKNRSNEELENPKG*
Ga0098042_10095207F016061AGGAGMSYITVKATNILNALTGTKPSIDRMNKRSFNRMGKYYVGASASGKFLQVNDGKHVRYYGNPFHNLYRIVSKKGTDYVIHQAK*

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