Scaffold Ga0098042_1008275

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1008275
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3361
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F032681	Metagenome	179	Y
F052260	Metagenome / Metatranscriptome	143	N
F087042	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10082755	F052260	AGGAG	MFVILATKPLNDGTKGFRFNFLGKKGIVRRRKLQSNGIKFTKGDCMNAYHLGKTTLYTEQAATKRKLCHFAG*
Ga0098042_10082756	F004493	AGGAGG	MQNTVVKNNALDFTNTQWNQLIEGNGLLLMWFIEWNKGDRQDANMLEFFTRKYNQSAGGDPWSMGGKVSLDGKYVSEGDDDLEPYFMINTDEGVGYIYPYAIVALPRKTGGHHIVRVD*
Ga0098042_10082757	F032681	GAGG	MTKAFNVENVKTVQTLAKRLNIEVGMPTSMAVEEAMTYLTMSFHKRNVDSIKAAELLRWWLSDFQDTELEYFETRVDLAKEVRNR*
Ga0098042_10082758	F087042	GAGG	MNTEQICIASFKSMFDERIADGVDLTPKYVEMLVKEHCEPYMIVTQGFTHDLLANALDYMDWDYISREIKDGR*