Scaffold Ga0098042_1006789

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1006789
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3781
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008731	Metagenome / Metatranscriptome	329	Y
F067210	Metagenome	126	N
F079326	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10067892	F067210	AGGAG	MITEDAVPAYNQNFQQLRGAKIISFCMAQCEFDPHQYWPTFIMQKGGDIFKFILSQDEEGNGGGFAFIEDV*
Ga0098042_10067893	F079326	AGG	MTRYYIATVSSDGRHANQRWVSNIDDLTDIMVQYVNEGYRVTIEEEIHS*
Ga0098042_10067894	F008731	AGGAG	MFVIFATKPLNDGTKGFRFNFLGYKGLTRKRKHDSRGYKINTGGCMTAIHLGKRTVYLEHNSTPRKLRHFAG*